Michigan Technological University

Department of Physics

is pleased to announce

a colloquium

with

Dr. Harold Scheraga

Cornell University

 

 

 

Calculation of Protein Structure by Global

Optimization of a Potential Energy Function

I will first give some background about the role of global optimization in protein folding & then I will describe an approach based exclusively on finding the global minimum of an appropriate potential energy function to predict the unknown structures of five globular proteins with sizes ranging from 89 to 140 amino acid residues. Comparison of the computed lowest-energy structures of two of them (HDEA and MarA) with the crystal structures, released by the Protein Data Bank after the predictions were made, shows that large fragments (61 residues) of both proteins were predicted with rms deviations of 4.2 and 6.0 A for the C-alpha atoms, for HDEA and MarA, respectively. This represents 80% and 53% of the observed structures of HDEA and MarA, respectively. Similar rms deviations were obtained for ~60-residue fragments of the other three proteins. These results constitute an important step toward the prediction of protein structure based solely on global optimization of a potential energy function for a given amino acid sequence.

Friday, September 17, 1999

3:00 p.m., Fisher 138

Refreshments will be served